Scaffold Ga0211484

Basic Information
Taxon OID	3300020269 Open in IMG/M
Scaffold ID	Ga0211484_1000194 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_A100001035 (ERX556080-ERR599041)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020269 Open in IMG/M

Scaffold ID

Ga0211484_1000194 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_A100001035 (ERX556080-ERR599041)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18844
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (43.33%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

18844

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (43.33%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_032
Coordinates	Lat. (^o)	23.4017	Long. (^o)	37.2183	Alt. (m)	Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

TARA_032

Coordinates

Lat. (^o)

23.4017

Long. (^o)

37.2183

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013777	Metagenome	268	Y
F017657	Metagenome	239	Y
F033839	Metagenome	176	N
F033840	Metagenome	176	Y
F060829	Metagenome	132	Y
F077401	Metagenome	117	N
F082820	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211484_10001941	F013777	AGGAGG	MTMWGPTSIDHFKNLHDHYLEKNPIVHAYATPYQNDPTNNPAAPWSKLMHEKRDLERIAFKTYIHPQGDFQNGYYDICDIEKGTFDCDNMKLGEVYPVILYAHHETMLTVGCVVKTSDHPDIHGKEQLALWIYYPSGENIESFDTASGH
Ga0211484_100019414	F033840	N/A	MSVFDYKLNRRQQLVKKGEMIDNNIDFSGRTNTDFTNKFVAKMRDTNNLYTRESPGQFDDQKAEVVRKNLITQADDRGQFNDPGQQVRSDAFLAKFRNSVLVNEEEKPSRQGILQYMQGNPKDPPVNGQFPTDGVKTT
Ga0211484_100019418	F060829	AGGAG	MLLPLVAGGLLVNEIRKAGERKEVNELIRRQKMADKMLGSPTGGFGYQTGFGPGMELPLSGYQSILRYTDQMGKQQRENMIKNLLAIEPITDRAKTRDFERQMGAARFRTQLGTQQGLTLQGQVGAQRLAQQGMQGATQALASNYQYQ
Ga0211484_100019428	F017657	GGAG	MEDNRKEALNKATKAKQKMAVEAEMMKQLQPTVPEVTAANIDMQPGINPNPKPEGPVINANVFNPGNLYPGISGNTKLAATWNPMMDPAAG
Ga0211484_100019429	F082820	N/A	MRKLIDGLAIASFVLSLTTVGAIGFGYLALTNKTNQEKIKGYAINEAQKLLTEQLGKSIPSLPDTTGDVVPTGPSNPLPTLPKF
Ga0211484_10001943	F077401	N/A	MTMKTFWAWKHSLNSTHEKMSGYTKILARDINSAVNKAHKHYKHHMFNSNFNVSVMSGETDEHGYAKECEYTTGKWTRKAWSAYKYFHSLTPDMQERVYNHYRNLDVHWNDKSKAELQTIVGELSNV
Ga0211484_10001944	F033839	N/A	MNNLSPITRAFLTVGIGVFIGILPVFMIINTLSTTAIKFCGRYGPDYTIVTVDTPFGSVKRCVAKD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211484_1000194

Overview

Ecosystem & Geography

Associated Families

Sequences