Scaffold Ga0211484_1000057

Overview

Basic Information

• Taxon OID: 3300020269
• Scaffold ID: Ga0211484_1000057
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100001035 (ERX556080-ERR599041)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32704
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (19.15%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_032
• Coordinates
  • Lat. (^o): 23.4017
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011769	Metagenome / Metatranscriptome	287	Y
F013249	Metagenome / Metatranscriptome	273	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211484_100005738	F011769	N/A	MANPNFKGRPVGSGKSTFIEDPLMGNYKIAIDEYSYNVIDTNKGKTVGYHTSLPQAILSIAKYLMLKDKTFSLTQYAKEFKETHLQLKEAILK
Ga0211484_10000576	F013249	N/A	MAKRKLLNLRVIGNSRQLLNQFIDNNKEYIFRETYKGIKHAIDQDKNIAEICSINTNSAIATIPEMGWENALSSSLGYFESVDEFEMCKEINDTLKMLYNAKRSSKYSKTISGSVVTN