Scaffold Ga0211484

Basic Information
Taxon OID	3300020269 Open in IMG/M
Scaffold ID	Ga0211484_1000007 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_A100001035 (ERX556080-ERR599041)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020269 Open in IMG/M

Scaffold ID

Ga0211484_1000007 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_A100001035 (ERX556080-ERR599041)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	95814
Total Scaffold Genes	97 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	76 (78.35%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

95814

Total Scaffold Genes

97 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

76 (78.35%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_032
Coordinates	Lat. (^o)	23.4017	Long. (^o)	37.2183	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_032

Coordinates

Lat. (^o)

23.4017

Long. (^o)

37.2183

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009079	Metagenome / Metatranscriptome	323	Y
F013421	Metagenome	271	N
F017147	Metagenome / Metatranscriptome	242	N
F020191	Metagenome / Metatranscriptome	225	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211484_100000743	F013421	AGG	MDLTDFKYYWNDVPGKGLCRNNLIYTSLINHSKSEFCMWFKHNSEYHKGHEQVVDQDLMESKYAREKDFLLSLDVDHKDLIPEITRIDPDNQAIYFKIQGVDFWEESHGKKYEEVLPDWEKQMLRILEKHKQLGIYKYSLHPSSYWVVDRELKNVNYFFAYHNTENKITVKDHLSHISTERQNELMPQMEKLGIEVDKTYPFDKLQILCLESFRNVYPDSFIDKAISIYK
Ga0211484_100000752	F017147	GAG	MPKWKKFYKFKEGLAVTNLLYEPLVSKDKKIFCMNWNKNEYHPNEFMTEELYNFWFNQEVKYLLHLSNKKYIPEILYLDTKNRMIEFKWYDKNLNVMIENNTINKIKNWQNKIKEIKDDLEKDKIFKINMYPHTFYFDDDDNAHIMDLYGCTDRYSRYLDTRFLKPLIRNKRFDKFIVNERLDTHELYKETIKTNYAEWPGDFLNA
Ga0211484_100000754	F020191	N/A	MSNDVIKSVYQNSLYQKILHEIDGVIFPLSDQWKRIGISVSGGLDSALMSVLLCSIITQNLWLTKVHIITNIRCWKTRPWQRQNSLDVYNWLVKSFPNIEFQRHENFIAPDLEWGSKGPNIVDEYGKLKSGNQIELRAHAEYVAHKEKLDAWYCGVTQNPDKEFDERLADRDVVIDSLSDKTLDKLIKPHMGGYACHPFTYVKKDWIVAQYKKLGIMDLFDLTRSCEGDADIYPDVFGDLDYRTYVPGSPVPVCGKCFWCKEREWGVANSDKE
Ga0211484_10000076	F009079	GAG	MKSDQILKWIATFTLIVGTFVNAGFPHLYPIGPMLLALGGIIWLVVSVIWKEPALITTNAVLTITGIGGIMLYYLR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211484_1000007

Overview

Ecosystem & Geography

Associated Families

Sequences