Scaffold Ga0211495_1006713

Overview

Basic Information

• Taxon OID: 3300020268
• Scaffold ID: Ga0211495_1006713
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B000000477 (ERX556113-ERR599107)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2516
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_066
• Coordinates
  • Lat. (^o): -34.8477
  • Long. (^o): 18.1136
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003514	Metagenome / Metatranscriptome	482	Y
F004191	Metagenome / Metatranscriptome	449	Y
F034340	Metagenome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211495_10067133	F003514	AGGAG	MVTPQEYNKLREKELILKAAKSSGAFKSEMIHGSLFVTFTPGFVDVLSQELKGVLEKLLDNTTVKMYNINKGEYAYDFI
Ga0211495_10067134	F004191	GGAG	MNKFKEIMATWFAVLGIFAIVGSAGAIETDQYMLAFTLFVIGSSTMFISIICQEKQ
Ga0211495_10067137	F034340	AGGAGG	MNYFKKIVDWVIQSYEPEKPEFRPKKVYKIKGRTYYLKKKRKRKXSVNILLR