Scaffold Ga0211495

Basic Information
Taxon OID	3300020268 Open in IMG/M
Scaffold ID	Ga0211495_1000712 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B000000477 (ERX556113-ERR599107)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020268 Open in IMG/M

Scaffold ID

Ga0211495_1000712 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B000000477 (ERX556113-ERR599107)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8139
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (80.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

8139

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (80.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_066
Coordinates	Lat. (^o)	-34.8477	Long. (^o)	18.1136	Alt. (m)	Depth (m)	30
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_066

Coordinates

Lat. (^o)

-34.8477

Long. (^o)

18.1136

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019562	Metagenome / Metatranscriptome	229	N
F041247	Metagenome / Metatranscriptome	160	N
F061913	Metagenome / Metatranscriptome	131	N
F084452	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211495_100071210	F041247	AGG	MTNFYSIQADKIKFNLDMLVDMYNTIDQTKWVHRQDKLPQYWPIDENNTFDRNHEFYRLLKENVNADIDETRVYFSRVHPGGIPNHWDFENFTKLQFPVICDEEDNDWSKSPVIFIDQFDQVVEKVEHTNNTPIIYSANYMHGTIKSLDNKNDRITFVVDIKYWFARVRS
Ga0211495_10007126	F019562	AGG	MWYHKKFKLQYDTNVFNEIIEYAERATWRQGYDQNGLLWNVEELPLNPKQFPILNELYEGLNTEFKRPSFFISNVKPGGLVNHIDHNKWGNLGIPLKGDFENTPQYFYDQFNHPVESFIVDSPVIFNTRMLHAVPRQLTDTGPRWVLMMDLFEWVDKLFDKIDKKTIWTDTKNFKNA
Ga0211495_10007128	F084452	GGAG	MINKLIWNKVEELFYWNISVDSPINQLPFTMDFILTCQKEFSMKVRDKEYPIRLGGIMDWHDKTMGDFVKEIDEQYQNNYFVAENGTSTTGVVGEIKDVNDKPITNKWNIRGEALVKRLQAMQKERPNLTILDMGCGVNEYKKHLNNVTGVDPYRKEADVICSQADFKPADDIKWDVIICFGSQNWYTYDEQYRNFMTLKKCLAPSGLLLWSHVHNYYKVFQPDHPHGHTWIHGDLEHAQKNSAFYFYDRNWKYTWYFNWTEHAVNTLAGHVGLKINKVDYDHCNLYRPPMYRIFTEMTH
Ga0211495_10007129	F061913	GGAG	MVEQGNFFVKCHNIYYNQQWLVDVLDSLKPSDWVNGVSRTGVAWNVSECRNIPYENMWKDIVENSTLDFVGSSERGVEKKKPWCFFSKLPPGGINLHYDHRRWGAVLFPVKGKFHLTPQIFATENYTEIERFNFEKSKIHNNGTPVFFDSRVLHAVPTPLDLEEERVVFSVNIHSHPTEFFKKAIDGTWLNKNTENIGVSND

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211495_1000712

Overview

Ecosystem & Geography

Associated Families

Sequences