Scaffold Ga0211648_1010331

Overview

Basic Information

• Taxon OID: 3300020267
• Scaffold ID: Ga0211648_1010331
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000927 (ERX556026-ERR599108)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2215
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_109
• Coordinates
  • Lat. (^o): 2.0663
  • Long. (^o): -84.5304
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044224	Metagenome / Metatranscriptome	155	Y
F046313	Metagenome / Metatranscriptome	151	N
F059352	Metagenome / Metatranscriptome	134	Y
F086365	Metagenome / Metatranscriptome	111	Y
F097153	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211648_10103311	F059352	N/A	MKRHIQDWQIRGGFNMDQWRLEVKEKNSWRVEAESDSTVELLKIARGLTE
Ga0211648_10103312	F046313	N/A	MKTQNKSIIVKDKLYQLRRTIDDLVEIGPDYAYFMNAQIAHKNLKKIKNLLEYIG
Ga0211648_10103314	F044224	N/A	MKLNKIIQSYKNSNMNKELLSHKLKRYYNLTEFERIIVKNNV
Ga0211648_10103317	F086365	N/A	MKFTKNELNLMRYAMYDLLNGDDVPNDKDKFEIHVNEIINKIDNELNR
Ga0211648_10103319	F097153	AGG	MKKNEVVVKSNGLRNELKEIRKSIDKLTNALIEIHIAQTNQHEINRKYCTCSSD