NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211648_1009123

Scaffold Ga0211648_1009123


Overview

Basic Information
Taxon OID3300020267 Open in IMG/M
Scaffold IDGa0211648_1009123 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000927 (ERX556026-ERR599108)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2400
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_109
CoordinatesLat. (o)2.0663Long. (o)-84.5304Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013897Metagenome / Metatranscriptome267Y
F031447Metagenome / Metatranscriptome182Y
F036278Metagenome170N

Sequences

Protein IDFamilyRBSSequence
Ga0211648_10091234F031447N/AMLQIETTLVVHSMKIREMATKTLHQYTITATQTFTFYKTVHAESIVDAHVKAHEQSEDLEDDWTCEWDSDWDDPTPENGEMVITHIEDEGEVDW
Ga0211648_10091235F036278AGGTGGMTRGYQPEGVKYTFPDDDPYQEGNEVYYNMSEFLNDSELHQIWEIVGKACDREKIDTTGDQELSVRVYDTIKQENNQ
Ga0211648_10091239F013897AGGAMIDNHLDRDQLLALMNTIDFAMDNDASYEEYTIIKSGTKDLQTIRDVVYNKIIQLGG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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