Scaffold Ga0211648_1007985

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0211648_1007985

Scaffold Ga0211648_1007985

Overview

Basic Information
Taxon OID	3300020267 Open in IMG/M
Scaffold ID	Ga0211648_1007985 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000927 (ERX556026-ERR599108)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2604
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_109
Coordinates	Lat. (^o)	2.0663	Long. (^o)	-84.5304	Alt. (m)		Depth (m)	30
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020716	Metagenome	222	Y
F062836	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211648_10079855	F020716	GGGGG	MSTARICKHCGKKYYPKSYYSYPQFYYGTSDEEKLEYARFHSLGCMTQWIRDNRQAFAHLVDTVSQNVIKEDNQ
Ga0211648_10079856	F062836	AGGA	MDKIRLNENKRRLLKKEWSKTVYNSMPMQVEDDLKSAQQEYREVRDMAWDGVITPQVEKN

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.