Basic Information | |
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Taxon OID | 3300020267 Open in IMG/M |
Scaffold ID | Ga0211648_1007075 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000927 (ERX556026-ERR599108) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2834 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_109 | |||||||
Coordinates | Lat. (o) | 2.0663 | Long. (o) | -84.5304 | Alt. (m) | Depth (m) | 30 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F025518 | Metagenome / Metatranscriptome | 201 | Y |
F029472 | Metagenome / Metatranscriptome | 188 | N |
F099446 | Metagenome / Metatranscriptome | 103 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0211648_10070751 | F099446 | N/A | MPTTKFVKELYNEDLVYSSVVFGMGFWIDDQGLFISAPEFQDGSLDVDNAIPVCDWLNWDELTAHHHAHLMHVNQMCILKRDSQQIDYYATMFGHPMQNLEKDN |
Ga0211648_10070755 | F029472 | N/A | MLSRKTIENLTESLMDDVANYVTEDPRFMHLLNELVPEAIDLELGEIDDRSAVDIITQIQSKLRCSPNHSKIHYPRCPL |
Ga0211648_10070757 | F025518 | N/A | KTSLREEAKVFLPVVKEFYPHLDDMLTDRIAKYCAVYSKGTDKASIRQAINDFEEVFDQELTQ |
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