Scaffold Ga0211648_1001808

Overview

Basic Information

• Taxon OID: 3300020267
• Scaffold ID: Ga0211648_1001808
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000927 (ERX556026-ERR599108)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6844
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium TMED154 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_109
• Coordinates
  • Lat. (^o): 2.0663
  • Long. (^o): -84.5304
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022752	Metagenome / Metatranscriptome	213	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211648_10018081	F022752	GAGG	MATLSNLLGGGGDSIDHRKEGLPLFGLFGTSGDQNSHMTYRIFDSGFKNVGSPWGAVCNSTTNYRFGILGDGSFAYNMNDFGTDLGHTNFTSETWSDYQRYWKSVYQCDQYPHAQYYTSSRDGFYSFHSFHSYDTNFEYDNGWTKINHVLPEGVRPRRIFCNRRNSLREITVGNHSAAAFDHYDYTSHKLDNSDTYAIGTGYNEKNKMLVMVHSSGEGSETSKTIHIFESSKCLNHVTKIKEYFDNLTSTEYFTGTWTTDNNRDMTVAVGDNKWTGFGHKNGNSMRYAAFNCENGQSLGTTDSARIYVGWQDFQGSTTTSYGANQGSQYYTKFNTTWDGTWGMIYSPYYYYGVGLNGFCMSLKNPRKFISVNQTKTDRGNPYLAWGRTGFHGGWSDNTDDQQWRTYCFAFDPTDSDHTQDTTVYYGSTDNNDVIRSDNALRGTTITNKTGNYGMEQSRTGLNG