Scaffold Ga0211648_1001404

Overview

Basic Information

• Taxon OID: 3300020267
• Scaffold ID: Ga0211648_1001404
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000927 (ERX556026-ERR599108)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7928
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Greenvirus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_109
• Coordinates
  • Lat. (^o): 2.0663
  • Long. (^o): -84.5304
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006793	Metagenome	364	Y
F016820	Metagenome	244	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211648_10014047	F016820	N/A	MTKKEFSYVVISSSGDKVEEIHGVYKDVEGACYGARSALTNLFPNHGDQAKIIRCEIISTEDARNQFEDSKPHDLFEKCEDGYCPLPTSKAS
Ga0211648_10014049	F006793	N/A	MTKQRATNEQMEERINYAADRLAKGERSMEIVKKLSIKHNVSLQQARDYVREARNVVTESIAPNDRAFIFSKVMSCLEQDRLDARKEDNLKEQGKATGGMVKMVSMLTSIDQVGSWDDSRDTYLFKNFSEAKKKVKHVDLDALDDNVEDLPF