Scaffold Ga0211648_1000014

Overview

Basic Information

• Taxon OID: 3300020267
• Scaffold ID: Ga0211648_1000014
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000927 (ERX556026-ERR599108)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 59188
• Total Scaffold Genes: 84
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 74 (88.10%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_109
• Coordinates
  • Lat. (^o): 2.0663
  • Long. (^o): -84.5304
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030890	Metagenome	184	Y
F031703	Metagenome	182	Y
F042078	Metagenome	159	Y
F076599	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211648_100001442	F042078	GGAG	MDNFDRFLLFILGICVLVMSSVTLANPDGYYMQTVEGIIFTLFIGSVGLTMVLISFFSIFFKE
Ga0211648_100001451	F076599	AGGAG	MNELEIIQKLDSIIADLIADGLHEIAMNIEIEKQKIAKQFNQAELHSQQIDIEELLDE
Ga0211648_100001462	F030890	N/A	MARNETIYTPIIKKVQEEMDAITDYISSGRPKNFEEYQRLVGKMEGLSIARELLQDTEKKFIDD
Ga0211648_100001472	F031703	GAG	MKKQEVCPICKTALKDTKEKQVQCITCNALISTDVEWQSKYGYEWVEDNAKT