Scaffold Ga0211519_1013638

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211519_1013638

Scaffold Ga0211519_1013638

Overview

Basic Information
Taxon OID	3300020266 Open in IMG/M
Scaffold ID	Ga0211519_1013638 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX556082-ERR598951)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2001
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_025
Coordinates	Lat. (^o)	39.3599	Long. (^o)	19.4084	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F053651	Metagenome	141	N
F074169	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211519_10136382	F074169	N/A	MKIKNFKTLFTTKKIIKNPIGNKNILFRRTTNRYGKKGTISHNVGYFYVSRDAETGRFVSRR
Ga0211519_10136383	F053651	N/A	MKYNKKEKILKEIDRRKLQKFEIKTKYRIMKTVLGGNLKYRIQLNKK

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