NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211519_1000803

Scaffold Ga0211519_1000803


Overview

Basic Information
Taxon OID3300020266 Open in IMG/M
Scaffold IDGa0211519_1000803 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_E500000178 (ERX556082-ERR598951)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11742
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (97.30%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_025
CoordinatesLat. (o)39.3599Long. (o)19.4084Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008925Metagenome326Y
F013187Metagenome273Y
F021207Metagenome220Y
F023319Metagenome210N
F078603Metagenome116Y
F105326Metagenome100Y
F105336Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0211519_100080312F008925AGGAGMTTKSKPTINTVTLNLINKLKKIDDTINEGAWEYIHLGDILRLQDAFAEVISYYDLKKEGGIHDYGADKGKYQQFWHSDYVCHTDPNAFDPSKVEEDDES
Ga0211519_100080315F013187AGGAGMPTKKIKKKPKITWAWIYGDEMLELWEHFGFPHPDPDDRMKVKFVKYESKEMQRG
Ga0211519_100080317F105326AGGAMEQRRNLTPTQHWELHQGLWHMLGCDMQLKYKDKTTAIYVDNKAKLKYTYSTKGFIKWFPISKEDKI
Ga0211519_100080318F021207AGGAGMSKRFKQVNIQHFATLVQEIDVSKYTQKEYVEIVEELYMSIFRHNTNGDYVIPTMPNEKGNWKVHKPSATKEEVMELIKKGQIIWNKDVI
Ga0211519_100080320F105336GGAGMKLQQRQITRVEQILSDLERKVEEMEQQDYITYDLGKDLENISFMLDMLREEIKDE
Ga0211519_100080327F078603AGGAGMKRNNLDIAMLITDAILNEFEKNGKVNIPLDEHKYSFPLQDRIQIELEKIKGE
Ga0211519_10008039F023319GGAGMSKKIKCQKEGCSNKAYPEDMENRASNLLLCDDCYTEIRYLMADYLDIDIQEIKI
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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