NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211519_1000171

Scaffold Ga0211519_1000171


Overview

Basic Information
Taxon OID3300020266 Open in IMG/M
Scaffold IDGa0211519_1000171 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_E500000178 (ERX556082-ERR598951)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25318
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (74.07%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_025
CoordinatesLat. (o)39.3599Long. (o)19.4084Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009033Metagenome / Metatranscriptome324Y
F019396Metagenome230Y
F026261Metagenome / Metatranscriptome198Y

Sequences

Protein IDFamilyRBSSequence
Ga0211519_10001711F026261AGGAMPKYFGTTEGIIDWNPVVQACEQCTTGDKNTVTSVVDRSEAEAEGPLLESYRGIINTWQNAGYSLEEIYWHDYYPGEHFDIEIQNKFAKIINAEPLRVFVSEVDPGRNVPYHWDVEDKEDEWLKLGELKRWVCFMDKPRWGNILILEDECFHNNPQGEIWEWDNYRSYHAGTSMGIHKQYMFHFLGRPNK
Ga0211519_10001714F019396AGGAMETQFEPYLKLDPSGIKCMAQQTYEPLVSKDGKTFCKNYNFPNEYAYRDQKDRPLYTEDVVDWFFQNELHYLKKFEGKPYAPEIIDIKNKKIYIKWYGKSCNQIIYANKPWPVPDWQQQIKDIILDQYNEGVYKLTMYPHCHYVDNNNQMKAIDWYGCVPVESPYIAEKWMQGIIHETAQFRLEETGAAVDSVLNLETMYKRSLSTHVKWGEENMNYIYREIFGEKHG
Ga0211519_10001717F009033N/AMELYLNPSWKRIGISLSGGADSALLAYLICSNTNAEIHFTSQIRLWRTRPWQEYVADQVIEWFKDRFDHTFHVHKNLIPPEMEEPSTTLITDEYGKLKPGNRIILRSFNEFIASKHNLNALYAGVTMNPDVDFPGKVEERDDSHLEPHFVHDGIDICHPFVYTKKDWIISQYIKHDIADLLNLTRSCEGDIDAYPEVFKDLDYKTYKPGQHVPTCGKCFWCLEREWGVINAMQK
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