Scaffold Ga0211519_1000106

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211519_1000106

Scaffold Ga0211519_1000106

Overview

Basic Information
Taxon OID	3300020266 Open in IMG/M
Scaffold ID	Ga0211519_1000106 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX556082-ERR598951)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	31095
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_025
Coordinates	Lat. (^o)	39.3599	Long. (^o)	19.4084	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026579	Metagenome / Metatranscriptome	197	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211519_100010638	F026579	AGGAG	MRINLIVLILALMAISVSQPSFSETISEVKIIFADKEGEGKPTDDEEPDCE

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