Scaffold Ga0211533_1031281

Overview

Basic Information

• Taxon OID: 3300020265
• Scaffold ID: Ga0211533_1031281
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000401 (ERX556012-ERR599088)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 913
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_064
• Coordinates
  • Lat. (^o): -29.5023
  • Long. (^o): 37.9965
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042346	Metagenome / Metatranscriptome	158	Y
F103386	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211533_10312812	F103386	AGGA	MKEMLQNYLKKNDSFVGGTLTGFFGMLTIIIIPNFVENYNLMITLEVFIFSIWFGILFYRHQLLKNNE
Ga0211533_10312813	F042346	AGG	MSQLIQILHSPFWGAAIVTIILLNAGDYKWWLIGLFGLFAIFGKIYIKNNEGAKNE