Scaffold Ga0211526_1025998

Overview

Basic Information

• Taxon OID: 3300020264
• Scaffold ID: Ga0211526_1025998
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000066 (ERX556116-ERR599158)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 972
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_038
• Coordinates
  • Lat. (^o): 19.0342
  • Long. (^o): 64.5162
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004493	Metagenome	436	Y
F018289	Metagenome	236	Y
F037208	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211526_10259981	F004493	AGGAG	METKFTKNKELGFTENQWGQLIDANGLLIMWFIEWNNKDWHGTPDMSIQEFFTKKYNQSAGCNPWPIKGAVSLDGKFVSTHQDDEDLEPYFMIDTDDGVGYIYPYAFVALPTKAGGHTIVRMD
Ga0211526_10259982	F018289	AGGAGG	MTEFTRSQLNLLRKQLQETIDGANLSDIKIEVGNCSYAGGEATFKVKCVLKGAKTREQIDLEYYAELHQIDTTAIAKLQGEDMSIIGYKSRARKKPWILQRLRDGAEFVCSDHTAKQFFKKREEIA
Ga0211526_10259983	F037208	N/A	ILATKSTNDGCKGFRFNFLGNKGIYRKRKVINRYGKSTGDTMTGYHFGKRSVYFQNTTPKRKLYHFAG