Scaffold Ga0211526_1001661

Overview

Basic Information

• Taxon OID: 3300020264
• Scaffold ID: Ga0211526_1001661
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000066 (ERX556116-ERR599158)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3976
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (6.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_038
• Coordinates
  • Lat. (^o): 19.0342
  • Long. (^o): 64.5162
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002344	Metagenome / Metatranscriptome	568	Y
F005351	Metagenome / Metatranscriptome	403	Y
F009959	Metagenome / Metatranscriptome	310	Y
F050305	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211526_100166110	F009959	N/A	MTEQEVIDRVCDRMVITLYNELDYYMFEELGYTETNDKYVKEADRLARLIIKEITK
Ga0211526_100166113	F050305	N/A	MNNLNTTIDKIAMSEFDMHYYQLSDNEKQLCHSEMVNNPKWLKKDWEDPMWTMAAKWEAGLPIYKNYTN
Ga0211526_100166114	F005351	N/A	MYNVNNPSNWSWSKAFDEMAKTVHKAELEQQIINHLSNYSGNPKWTELTKDQQEDHYEILTQIL
Ga0211526_10016613	F002344	AGGA	MLYDKLKPHIKDKLKSQAEEYSVSISNIFNTLKQKNSYTDLTIEEIRTICTFGDVWYYDLTQKDIIWGDWLTK