Scaffold Ga0211526_1001069

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211526_1001069

Scaffold Ga0211526_1001069

Overview

Basic Information
Taxon OID	3300020264 Open in IMG/M
Scaffold ID	Ga0211526_1001069 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000066 (ERX556116-ERR599158)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4967
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (92.86%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_038
Coordinates	Lat. (^o)	19.0342	Long. (^o)	64.5162	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008558	Metagenome / Metatranscriptome	331	Y
F089015	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211526_10010693	F089015	GGAG	MKITAEEFVESLARLSDEEKQKAANLLVSKWKYLTKSFMGMVDAELQDQFMTEQAEIFEMQKSAENGTKIW
Ga0211526_10010696	F008558	GGAG	MFDNNGNAIDGWAILKCQPDKQPEIVSLHQCLGNAEEEKMVLNEMSESTDTTFVVKNTFGCMIETT

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