Scaffold Ga0211679_1016200

Overview

Basic Information

• Taxon OID: 3300020263
• Scaffold ID: Ga0211679_1016200
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000809 (ERX555942-ERR599125)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1606
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_085
• Coordinates
  • Lat. (^o): -61.9898
  • Long. (^o): -49.3613
  • Depth (m): 790

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013815	Metagenome / Metatranscriptome	268	Y
F023622	Metagenome / Metatranscriptome	209	Y
F072442	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211679_10162001	F023622	GAGG	MKTFKEFKGNPPTLIVEQVYFKVSIPDMSTMFMKATSESAVKLDMRKKLKPDVVKEVTIERVTKAEMRKIYRAMGQGKEDEKEKEST
Ga0211679_10162003	F013815	GGAG	MYFVQYEKTLPPWYSGTDKIQAETSEDAVKEFYKRHDSFEERIRSVRKVQDTYQK
Ga0211679_10162004	F072442	AGGA	MKTFKEFFQLGVTKPSKFDVQNYLNSLGTRLMQLPDIKKKIIKHFKNIKNLKLDSFGKKVLSFEEYIPEEITKRDIKKNK