Scaffold Ga0211537_1057862

Overview

Basic Information

• Taxon OID: 3300020262
• Scaffold ID: Ga0211537_1057862
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000097 (ERX556100-ERR599172)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 698
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_039
• Coordinates
  • Lat. (^o): 18.735
  • Long. (^o): 66.3895
  • Depth (m): 270

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027653	Metagenome	194	Y
F071324	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211537_10578621	F027653	N/A	SPQDTEDIDVLITKRDGQHATLKELEELMVDMFDSAYDTHGFFLDTCYMRIPQWIGDYPRNKEFLKSVERKQLFITITKNEDKGIVCKYKRYGKLNCCYMSSFGPLSGWDKEDSALINRWVDLDANYAKMVDLRRIIKYYDNNKERNIGDFLNEFQEYSGY
Ga0211537_10578622	F071324	AGGAG	MISFIIPFSTIEKDKFLNLNEKEDLWEENDSANIVYSTIKTIKNINSLKCEKEILLMDNSHTWPNVD