NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211537_1011215

Scaffold Ga0211537_1011215


Overview

Basic Information
Taxon OID3300020262 Open in IMG/M
Scaffold IDGa0211537_1011215 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000097 (ERX556100-ERR599172)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2143
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_039
CoordinatesLat. (o)18.735Long. (o)66.3895Alt. (m)Depth (m)270
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000567Metagenome / Metatranscriptome1020Y
F009536Metagenome / Metatranscriptome316Y

Sequences

Protein IDFamilyRBSSequence
Ga0211537_10112152F000567N/AMKEKLLKITQKISTWHISMFKFLTRKSKTSVFFTWLLVFICLYEIFEHIFIPLFLIWWGF
Ga0211537_10112153F009536N/AMKKDVMKQALELMPGQLKEEIKSNLENPKSYTRLFVKILEKIKDAKKESPELTALKNAILKINKENYSKITEQSVSKTPSTLNARDIEYWLQTAKKKDQLIYYTGGTFDKRSVKDESVFRKARNLAMDYDNISFKNKKYQYRGSVKGEWGCNYKNIITLVQKKVAKEQRDKIWDEYKKEYVPGNIISYPIYNYIMIKQ
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Institute for Fundamental Biomedical Research
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