Scaffold Ga0211537_1009859

Overview

Basic Information

• Taxon OID: 3300020262
• Scaffold ID: Ga0211537_1009859
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000097 (ERX556100-ERR599172)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2340
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_039
• Coordinates
  • Lat. (^o): 18.735
  • Long. (^o): 66.3895
  • Depth (m): 270

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F002715	Metagenome / Metatranscriptome	535	Y
F043074	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211537_10098592	F002715	AGG	MPEEELQSVKLEVGLLKNEVEVRGRQVDTLLQKLDKATDSLTELTVQIKTLNSRQQDHLTHDNAIREELKLLHARIGSLHDKLLNDHEYIEKRLDALDQYKSKLMGMIIVVGGVVGTIVATAISIFIKD
Ga0211537_10098593	F000245	AGGA	MKTFTEIREGRLDDKMDKAVSDEIKKRKLAKFPVNATDDYKMKNKKNLAFKFPTPSGEMMFHVYLRKMAPSKGQPKGVMAFNYDIEDK
Ga0211537_10098594	F043074	AGAAG	MKTFSQYLEEANSKYIVSKNPNDKKWYVMGHVGNNKWMPS