NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211534_1025953

Scaffold Ga0211534_1025953


Overview

Basic Information
Taxon OID3300020261 Open in IMG/M
Scaffold IDGa0211534_1025953 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000401 (ERX556096-ERR598970)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1014
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_064
CoordinatesLat. (o)-29.5023Long. (o)37.9965Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001504Metagenome / Metatranscriptome681Y
F007173Metagenome / Metatranscriptome356Y

Sequences

Protein IDFamilyRBSSequence
Ga0211534_10259531F001504GGAGMTQNTEHFYAVQSFLEDDELHKIWNIIEIAMEREGYDVQNAELSMRLYDPELTET
Ga0211534_10259532F007173GAGMQTTTTKAIISRDKIMEYIHEERDLLMGLQDDLSDMLSATGKFSITLDEIVQNFMPYIPLYLIENEDEIKQAFPDRVTDDEYIFIYDRDMTPNEITLNVEWLD

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