Scaffold Ga0211588_1063483

Overview

Basic Information

• Taxon OID: 3300020260
• Scaffold ID: Ga0211588_1063483
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000405 (ERX556087-ERR599025)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 615
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus → unclassified Prasinovirus → Prasinovirus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_064
• Coordinates
  • Lat. (^o): -29.5123
  • Long. (^o): 37.8586
  • Depth (m): 65

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033951	Metagenome	176	Y
F065458	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211588_10634831	F065458	N/A	KDPKAYYEQSKLDWKKIYQMIPIMYMMNQIEEEKNN
Ga0211588_10634832	F033951	N/A	MSAALLGAAVVCCCSSSSASVGAFFGGFIPGTSQYVLKKMKKLIQIVIALDATPESCENLYKYTKEIEGTSAVESAVQSLSENEKTILERVYDIGRRGVAPEKICDKSFMDSSIALFKKVQNAPEGEDVSVYCNELKDFSNEDKRYPKYYWDESKKEFIRDREY