NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211588_1000383

Scaffold Ga0211588_1000383


Overview

Basic Information
Taxon OID3300020260 Open in IMG/M
Scaffold IDGa0211588_1000383 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000405 (ERX556087-ERR599025)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6529
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (41.18%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_064
CoordinatesLat. (o)-29.5123Long. (o)37.8586Alt. (m)Depth (m)65
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013777Metagenome268Y
F024330Metagenome206Y
F067840Metagenome125N
F073669Metagenome120N
F103425Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0211588_100038311F073669N/AMIEPNMDLLEAMRVEANLCYERGDDEDGDALVKSIFDQIFPGLVEEAKRNPTFIYQLIVLANTEKDEIKATHYKSIILYLKDNGVKF
Ga0211588_100038312F103425N/AMSDKTYKTYNVEAKGTIKLWMDVEASSQEEAEAMADQVKERIYGEPGPWRPLYDGYTLEITSVRPEPDKSCMRPFIPGFDD
Ga0211588_100038316F013777GAGGMTTMLGPTSIDHFKNLHDHYLKKEPIVHAYATPYHDDPADNPAAMWSFVMHEKRDLERIAFKTYIHPQGDFYNGYYDICDIEKGTFDCDNMRLGEVYPVILYAHHETMLTVGCVVRTSDHPDIVTGEEQLALWIYYPSAENIESFDMASGHVYK
Ga0211588_10003835F024330N/AMSQNDQVPAGTENYPVNNYIPKSNPNSRPKKFTKYAYVIKNQVVWDRMRKKYVVLEGKGQPETQPIPLLHKDNRKAYEDACDVCGWNFKNKEARTLYVTDGTYISPTAIKRMRELP
Ga0211588_10003839F067840GAGGMVKKLGKRYRQTKQAIYTAYDIISLIVILLSFDKLLTSKSRSVEPRQVARLIEKLPKIKKILYDSAPWWAFDDMDVKSK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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