Scaffold Ga0211588

Basic Information
Taxon OID	3300020260 Open in IMG/M
Scaffold ID	Ga0211588_1000070 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000405 (ERX556087-ERR599025)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020260 Open in IMG/M

Scaffold ID

Ga0211588_1000070 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100000405 (ERX556087-ERR599025)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18646
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (37.50%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

18646

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (37.50%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_064
Coordinates	Lat. (^o)	-29.5123	Long. (^o)	37.8586	Alt. (m)	Depth (m)	65
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_064

Coordinates

Lat. (^o)

-29.5123

Long. (^o)

37.8586

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017657	Metagenome	239	Y
F033839	Metagenome	176	N
F033840	Metagenome	176	Y
F043451	Metagenome	156	N
F064809	Metagenome	128	N
F082820	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211588_100007011	F033840	N/A	MSVFDYRLNRREQLVRKGEPIDNSVDFSGKTSPDFRNKFIAKMKDTNKMYQRESPGQFDDQRAEVVRNNLTAQADDFGQFNDPTDQVKSDAFLAKFRKSMLVNEEEKPNRQGILQYMQGDPKDPPVNGQFPTDGVKVS
Ga0211588_10000702	F033839	GAGG	MNNLSPITRAFLTVGIGVFIGILPVFMIINMLSTTAIRFCGRYGSDYTIVNLDTPFGTIKRCVAKN
Ga0211588_100007023	F017657	N/A	MEDNRQEALNKAKKAQQMMLIQAEMEKQMQPTVPEVQAGSISMQPAILPNPKPQGAVIGADIYSAGNVYPGISGSTKLAATWNPMMDPAEG
Ga0211588_100007024	F082820	N/A	MRKLIDGLAIASFVLSLTTVGAIGFGYLALTNKTNQEKIKGYAISEAQKLLADQLKKSIPGVPDVTGDVVPTGPSNPLPIPPKF
Ga0211588_10000704	F043451	GAGG	MTTIQPWLYPNNPSVDRIVYIPLQSAHILEYQEEMIDAEGNVYWKTVDSTTIGGATSVKEFLEQMKDFYESKSCRKDRMM
Ga0211588_10000705	F064809	N/A	MEISMLNTTFTGNITFAEIVEQDAKVENPFLKIVVAVNDVNDNGLRITVRTKNGLLEAARNGEDLVGARVVINGTIDIASIRSHYVDDEGKCVALKQPNARVYANSIERMNRKPAPATVQTELAVS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211588_1000070

Overview

Ecosystem & Geography

Associated Families

Sequences