NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211633_1012702

Scaffold Ga0211633_1012702


Overview

Basic Information
Taxon OID3300020259 Open in IMG/M
Scaffold IDGa0211633_1012702 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000482 (ERX556041-ERR599103)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1556
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_068
CoordinatesLat. (o)-31.0136Long. (o)4.6932Alt. (m)Depth (m)50
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007390Metagenome352Y
F032032Metagenome181Y

Sequences

Protein IDFamilyRBSSequence
Ga0211633_10127023F032032AGGMKKVISKNTIKVGNKHYTEEKYWAMFPSDRIITARTRKLTMEDFFNVGEVVLILLAGIFLLKIMFDFGMAMEAWSELDTIMRGY
Ga0211633_10127024F007390GAGGMKKFLILLFLSVGLSQTTFTDEEMINLENDFIYLENMVDSLAFEDSLKTILVSTLEEELELTNEELKLTNEQLALTEDKVKLVKPSWWENKWLYFGYGAGLGVSITLLINQISDAVNLF

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