Scaffold Ga0211633_1006984

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211633_1006984

Scaffold Ga0211633_1006984

Overview

Basic Information
Taxon OID	3300020259 Open in IMG/M
Scaffold ID	Ga0211633_1006984 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000482 (ERX556041-ERR599103)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2204
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_068
Coordinates	Lat. (^o)	-31.0136	Long. (^o)	4.6932	Alt. (m)		Depth (m)	50
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007227	Metagenome / Metatranscriptome	355	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211633_10069845	F007227	GAG	MKSQVKKLTKEEIGYKTTDKIRHMWLLNPHDHHMLYVRDDGSFYGFTHMKGEDPEEWFWEAHGIQTELFPPEPPKSHKFTQEQLDRAPHHNILEKYYGKDWKPVPQEGLGDHF

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