Scaffold Ga0211529_1014244

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211529_1014244

Scaffold Ga0211529_1014244

Overview

Basic Information
Taxon OID	3300020258 Open in IMG/M
Scaffold ID	Ga0211529_1014244 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000073 (ERX556061-ERR598949)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1334
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_038
Coordinates	Lat. (^o)	19.0108	Long. (^o)	64.532	Alt. (m)		Depth (m)	25
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008152	Metagenome	338	Y
F013575	Metagenome	270	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211529_10142442	F013575	AGGAG	MNLTWFYFHCVLALVIIYKDYNGTLEESLNNFEKSIGLYTYIDTTEEELDVPYYIPPITEEVDSTWILPDSLRIKKDG
Ga0211529_10142443	F008152	AGGA	MAEEYDTLGWYKDTIKRMSWDEIQELMEEKIKNGSWNKFVETLGKPPHVIKHDHFIEEMNRKKDESNIKE

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