Scaffold Ga0211529_1005584

Overview

Basic Information

• Taxon OID: 3300020258
• Scaffold ID: Ga0211529_1005584
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000073 (ERX556061-ERR598949)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2074
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium TMED67 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_038
• Coordinates
  • Lat. (^o): 19.0108
  • Long. (^o): 64.532
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008424	Metagenome / Metatranscriptome	333	Y
F015742	Metagenome / Metatranscriptome	252	Y
F016667	Metagenome / Metatranscriptome	245	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211529_10055841	F015742	N/A	MDSKKAYEQLKEEIVDRESAYLCTELERALDRIITWTDPLDETMFRDIKESAIKLLKEWH
Ga0211529_10055843	F008424	N/A	MEKKINILERLLYLTLIAGICFFTGVFYTYYKIDQRLWNEDILKARDIETRYLNYPTKRNYKRDDLERIIYGK
Ga0211529_10055845	F016667	N/A	MKLNKNLKRVLVTVALVSTGFALGTQNGEQKILDRWENRWFESKWYDLQSIEDILYDIDYSIELGE