Scaffold Ga0211529_1000017

Overview

Basic Information

• Taxon OID: 3300020258
• Scaffold ID: Ga0211529_1000017
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000073 (ERX556061-ERR598949)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37992
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (52.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_038
• Coordinates
  • Lat. (^o): 19.0108
  • Long. (^o): 64.532
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019471	Metagenome / Metatranscriptome	229	Y
F033762	Metagenome / Metatranscriptome	176	Y
F082531	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211529_10000171	F082531	GAG	MEWTPQSAEQKLIQSVNPLSELYMNDQDIEQFIKAFDDFMQHAETEVDEFKKREEARAYTEQFYEKKASELEVTVDYYMQEFL
Ga0211529_100001715	F019471	N/A	MFTSITRRQSFGATYQWAVLSTLPMDTDKQRGGLRACEVNQALGMPKEARTTVTLLLKAMASQGMVRRYEYMMGKQKMITYKRLLPLRKRERIARLMGV
Ga0211529_10000179	F033762	N/A	MYDDYDLDYTYAPQYEYDLDEIYDSWIQSSSSSQVYLDEDLHLDDEYARDTQDYDALAYRHYA