Scaffold Ga0211529

Basic Information
Taxon OID	3300020258 Open in IMG/M
Scaffold ID	Ga0211529_1000010 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000073 (ERX556061-ERR598949)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020258 Open in IMG/M

Scaffold ID

Ga0211529_1000010 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100000073 (ERX556061-ERR598949)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	43343
Total Scaffold Genes	58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	41 (70.69%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

43343

Total Scaffold Genes

58 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

41 (70.69%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_038
Coordinates	Lat. (^o)	19.0108	Long. (^o)	64.532	Alt. (m)	Depth (m)	25
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_038

Coordinates

Lat. (^o)

19.0108

Long. (^o)

64.532

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003196	Metagenome / Metatranscriptome	501	Y
F010091	Metagenome / Metatranscriptome	308	Y
F014085	Metagenome / Metatranscriptome	266	Y
F025614	Metagenome / Metatranscriptome	201	Y
F040134	Metagenome / Metatranscriptome	162	Y
F077364	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211529_100001023	F014085	N/A	MNGLSEIREEAMQRANNQCEWAYCNDNKWLELAHIQGIGMGGNKKRKFDINNVAILCKHHHDIYDGRQRVGTSVAYRDLLKGFLKREQTI
Ga0211529_100001025	F025614	GGAG	LSGNKPFDVNRVNIFTHPKYMKVWAQQFNKACGSDTFKVKPDMQKLRFLMDKFVTDYNYHLEQLEGEEE
Ga0211529_100001031	F040134	AGG	MIDNIVKSNWKLQSIEYSGLGNKPHFILMNDSGDFKLVPVEIGIYNLRKLLGLEEE
Ga0211529_100001033	F010091	N/A	MSIMTTMDIDELLYEAENGKRSAILTRITPEAQPFWDGCEERVKNGTPIKPYVVSRLLKEHFNIKISESAVRHHFENIATHG
Ga0211529_100001053	F077364	AGGAG	MAFDTLGRPTNKAVDNVNVFKFRPGQIVDNDVYLDPGDYINPGQDANGNPGIAKQYQGETTSSPKPNDSGRTISEGTTIAKALYNFLPDEVIDEFAKAWVKSGDPDVAIGTTRQTKAWKDNFGKLMRDDGTLVMDEMTFLSTKASYKQTLAEVGIKDFTDFEDEFDDMATGFETDDPVSAEEFQARIDMVYGGVKDQIPEVEKLFRERFNINLDAPTIFGALINPKIQDKVLAGEIATLQLQAEASSRGFTTTFGRFQELRNLGFTQEQAKGVYSTASDFISQASSVGRDLDISTLEDAALGDTSAQQRLQRIQSEVQSRGGLTLGAAKKGDEVIGLTAD
Ga0211529_100001056	F003196	AGG	MQLQKEVLIDVSADANNSSAAQCDGLLLSGIVFPAAMTGTAVTFDFAFDGSTWVDVVETDGTEVSYTVTAGDVVRVDPSGWAFATAGSLRITSNATEAADRTINLIFKQS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211529_1000010

Overview

Ecosystem & Geography

Associated Families

Sequences