NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211704_1044856

Scaffold Ga0211704_1044856


Overview

Basic Information
Taxon OID3300020257 Open in IMG/M
Scaffold IDGa0211704_1044856 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000508 (ERX555911-ERR599048)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)654
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_072
CoordinatesLat. (o)-8.7887Long. (o)-17.9142Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033459Metagenome177Y
F033838Metagenome176N

Sequences

Protein IDFamilyRBSSequence
Ga0211704_10448561F033838N/ANFEVQTQESQVLGFYSNTGQGGTEGGPGTGKALLYTPGQSLEVLGTGLKVRNAGDNTELPAKIIRCKNGDVIIDCYNGNITLRGRNITLDANGGGQDGQIILSANRIINAKAPDIRLQGEKILVDATNRVDIISKGFFQLKYGFSLAAAHGDMDFGVLTQTLKKDILATPTTLGDN
Ga0211704_10448562F033459GGAGMQIIKTQTDKLVVGSNDVSHPEGKDKSPTGTAVLNGPVYV
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Institute for Fundamental Biomedical Research
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