Scaffold Ga0211704_1020524

Overview

Basic Information

• Taxon OID: 3300020257
• Scaffold ID: Ga0211704_1020524
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000508 (ERX555911-ERR599048)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 957
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_072
• Coordinates
  • Lat. (^o): -8.7887
  • Long. (^o): -17.9142
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062840	Metagenome / Metatranscriptome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211704_10205242	F062840	N/A	YFYYMYNKFREGLIGNNAYLNWKAYIKKVVSACTYKRVDNTLDDTTETCGNKCAEALVKDMDKHKQLKGVLYVRLGMSILKQANG