NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211645_1018653

Scaffold Ga0211645_1018653


Overview

Basic Information
Taxon OID3300020256 Open in IMG/M
Scaffold IDGa0211645_1018653 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000929 (ERX556010-ERR599067)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1179
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_109
CoordinatesLat. (o)2.1008Long. (o)-84.5107Alt. (m)Depth (m)380
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016978Metagenome243Y
F092217Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0211645_10186531F092217N/AVEILAYAIVTFALIGLLSNFFFIFFEEANNELNEEYKDD
Ga0211645_10186532F016978AGGAGMIKPGIEPFAKFKVGDKIRGRDALGIVDGQPGIVREVHASYPTADDYDDLTNPGIVYAVQFMKGNFLLKDYQMDLLGKQQLFNFMYDFSHIAEMENGNSEPLEXTTDIMQ

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