Scaffold Ga0211586_1029492

Overview

Basic Information

• Taxon OID: 3300020255
• Scaffold ID: Ga0211586_1029492
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000131 (ERX556136-ERR599013)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 977
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_042
• Coordinates
  • Lat. (^o): 5.9997
  • Long. (^o): 73.914
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006867	Metagenome / Metatranscriptome	363	Y
F015346	Metagenome / Metatranscriptome	255	Y
F059941	Metagenome	133	Y
F063682	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211586_10294921	F015346	GAGG	MNPEWKLYKVGDLVMAGTSRVPGLVTKSNYWALDEYLGGEIECIDVMFGGHESKQYPV
Ga0211586_10294922	F063682	GGAGG	VKPGDLVRIRKTSIDHMSANWFIWHAEHKTPLVLIEELNKSYWKVLKPDGETVFVHKSHLTTRMY
Ga0211586_10294923	F059941	AGCAGG	MKLGTLVQFAAYGAVMDTGYVSSHDEEDPEFMWVECVKMGPQRVRKDHTLLEVLSEAG
Ga0211586_10294924	F006867	GGAG	MLQGKELHKSIQKRCRIQPGMLVKSSHRDVIDKLALVVKVSPACSFDRDYEGAEEHIFYLCEPFDGTPSFVDYVCNLEQVS