Scaffold Ga0211586_1016235

Overview

Basic Information

• Taxon OID: 3300020255
• Scaffold ID: Ga0211586_1016235
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000131 (ERX556136-ERR599013)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1426
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_042
• Coordinates
  • Lat. (^o): 5.9997
  • Long. (^o): 73.914
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019151	Metagenome	231	Y
F053336	Metagenome	141	Y
F054095	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211586_10162352	F019151	AGGA	MIVANERALDGLELFEINGQESFEMENETLKICASEDGTIHRSVRGLDVLDADGNCVFSLSWSESGVCGTLHDEDFEIQITEEF
Ga0211586_10162353	F053336	GGA	MNEYFEYLTNLRDNGSMNMMWAPTMLQANFDLSVKESREVFSKWCESLKGN
Ga0211586_10162355	F054095	GGAG	VAMVRKRRGTTMIPQWKMNGKDMRFDGSIEIGVVEVRDLFNDLVVTLWVDQEESGSIAVKTLGGIGNGRYSVQILPREKPIEEGEEWKEC