Scaffold Ga0211586_1005333

Overview

Basic Information

• Taxon OID: 3300020255
• Scaffold ID: Ga0211586_1005333
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000131 (ERX556136-ERR599013)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2874
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_042
• Coordinates
  • Lat. (^o): 5.9997
  • Long. (^o): 73.914
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042384	Metagenome	158	Y
F049043	Metagenome	147	Y
F056677	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211586_10053331	F056677	AGGAG	MDIYRNQERELKLARKPLIVLEDELWQINQLSRLRKDLRNRKKRLEKVIAVKRLALQAVQEKIEREVDKVNEK
Ga0211586_10053332	F049043	GAGG	MKNDINDLHLRFVQLVMDMKKEGHDPLAIAGCMLAGAVQMYQSELGMQTTSDLLDQIANGSSDDYDIDISTEKETIH
Ga0211586_10053333	F042384	N/A	MVVVMIMILISVRRKKQYIDGDYIMGLMPIYYTTTKMSGKRKSSVRNQRLNKEHEKWLRGMGIDKPWKPKSEKLALSGANRDERYRSVGDGIGNGFVKTTSAISGDYIVGQAYNKGNLVVLSKEDAKDESTGKRR