Scaffold Ga0211685_1002749

Overview

Basic Information

• Taxon OID: 3300020253
• Scaffold ID: Ga0211685_1002749
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000780 (ERX555982-ERR598945)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3018
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_084
• Coordinates
  • Lat. (^o): -60.3606
  • Long. (^o): -60.5096
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009716	Metagenome / Metatranscriptome	314	Y
F018621	Metagenome	234	Y
F087748	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211685_100274910	F009716	AGGAG	MNKKISNETVPVSMKMPIDNSLSENSKHLKKEIDDWLKEGNKKTIIPIDKGVK
Ga0211685_100274911	F018621	N/A	LMYLTGVGNMKATEKIKLMMRLEKGFKKLDLDELNLISKTLDKEIENKVKLFFRGEKLHKAILKRELTKPDRW
Ga0211685_10027497	F087748	AGGAG	MTTEELYRQFETLTVDMVVKEKHDILECAAMMMAQAMRIYKTALTPEDYEVMVKTILESRIDITEMEPPTLQ