Scaffold Ga0211685_1002684

Overview

Basic Information

• Taxon OID: 3300020253
• Scaffold ID: Ga0211685_1002684
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000780 (ERX555982-ERR598945)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3064
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_084
• Coordinates
  • Lat. (^o): -60.3606
  • Long. (^o): -60.5096
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008425	Metagenome / Metatranscriptome	333	Y
F024797	Metagenome / Metatranscriptome	204	Y
F051263	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211685_10026843	F051263	N/A	MGITNFESFELNEAEKHEFNPNETAERLKRRETQNIERYRAAQEREDNYGTTYYKYRIAIDKIDLQKLKLMTQIHQLKQKYKK
Ga0211685_10026845	F024797	N/A	MSEFFRTAMGRKLIDGDIPKLVNVLERIAIQMEKSNKLDEKRFVLEERIQKLTLKESKGK
Ga0211685_10026846	F008425	AGG	MANKDITYKQFIAHMDKGNKVYMKKPKSWQKVWFWWESKRDKWFLNKAYDKREDGQVIIEPSVFITAKQMESHMSYMERQGYKYNIDE