NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211685_1002384

Scaffold Ga0211685_1002384


Overview

Basic Information
Taxon OID3300020253 Open in IMG/M
Scaffold IDGa0211685_1002384 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000780 (ERX555982-ERR598945)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3330
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_084
CoordinatesLat. (o)-60.3606Long. (o)-60.5096Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005720Metagenome / Metatranscriptome392Y
F051469Metagenome144Y
F070572Metagenome / Metatranscriptome123N
F101907Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0211685_10023843F101907AGGAGGMAYDGTIPAGGHANFVSPNTAQEHGSDGAVDFITVDVLAAGTGEVTHPLAAANTAGLHLIKEAIQNQGVNILGNGVETAAFEHTFMVRRDSLDTISSTTTAAAIQAAIRALNANSKITLTISSATAADRDMGRLSAMA
Ga0211685_10023844F070572AGGAMAITKNNFVLNQNYELIGHEVTILAVDFINTMAAEVNDCSDGTALGGLDLVRKTFEQQGLSILSEGPLTNSGTEKNYLVRKDSIDALAGTLNGLQAAIRALDAAEDTHPNITATITSATVAEKELIVAV
Ga0211685_10023845F005720AGGAGMTTSNATANMSRRQSFHGKGLTFIEMMFDDEMVTAGTTPDTKESVFNEMSKLVGTFGTIVAQSYALGCKATEKDAALATSILEDELCDYYTFMVEGTPGQFNAADSAGDSNFDADQADATDPGVIADAEADIEVEILARIAENDSAGGVHVDVRYLPADGVTSAGGEVVYGFNSARVNA
Ga0211685_10023846F051469AGGAGMIEKFTVEIEVGDRVEAGRLHLSNQTIKAIEVDKWGHPVLVLSSGRKRGLFSCRIKKLIPADVKRVQEPGEILMTKEQWAQAQLVIDEAKAK
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Institute for Fundamental Biomedical Research
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