Scaffold Ga0211685

Basic Information
Taxon OID	3300020253 Open in IMG/M
Scaffold ID	Ga0211685_1000309 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000780 (ERX555982-ERR598945)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020253 Open in IMG/M

Scaffold ID

Ga0211685_1000309 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100000780 (ERX555982-ERR598945)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18630
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (14.29%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

18630

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (14.29%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_084
Coordinates	Lat. (^o)	-60.3606	Long. (^o)	-60.5096	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_084

Coordinates

Lat. (^o)

-60.3606

Long. (^o)

-60.5096

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000751	Metagenome / Metatranscriptome	907	Y
F025069	Metagenome / Metatranscriptome	203	N
F032718	Metagenome / Metatranscriptome	179	N
F034621	Metagenome	174	N
F036311	Metagenome / Metatranscriptome	170	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211685_100030916	F034621	N/A	MSNDITEVIDILRRRDFYGAGDCVEIAKGKRQIVTSWSGLKRKVKRTIKAKK
Ga0211685_100030918	F032718	N/A	MIRALSPFYIDTPLVYGGVTCAKYILNVWVWNGDKSTPDSTNSYQITYENTTASTGTHSININAIIQDYIEFKEPTPSLVAGVQVIDGNNQQWVYSYVTYDAVATIQNEATDIMVLGYAYGNEGKNVTSVKNNTLLIPQQYKVNKQGSFVFPIYVPTGLTPQAISIKSYPALTINFTNTPAQSDLSNKVIKYLWIDAAVATNESYIEIIWNGKTTTLDITRECKYTPLNTFFQNKDGALQSFTLFKKQEESINVTDSNFETNRGQASAGFHQFVRYGVQARTTLTAETGWLDEDMNEIVKQILLTERIWSFTGGVYTPLNLKMTSQKFKTRQNDRLINYTMTFEKSYNEINNI
Ga0211685_10003093	F025069	N/A	MYKIIADYMTLGLWGMSMANTITSFDIQSASSIAQLILSVLGIVYLGVKIVNETLNGKVEREGKRIANEINNRELDEEL
Ga0211685_10003094	F000751	N/A	MMQIYKTNFPTEQQGKDYLLNLGVIVEQDGEIVFAPTTAAVVYIGKIVDPTKTTDPDNPIYYSGFAIDVMSSETLDFGTFEVFPADKAAHSFYGWARDAEVPKTQN
Ga0211685_10003097	F036311	N/A	MKIYVDSVTKELVLLNGIEYRYPAYCEIQRQKQGNFIIIKTTNNVAVLDKTIFSDLQNEAGTAYASFAALKTALDSYFDSTL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211685_1000309

Overview

Ecosystem & Geography

Associated Families

Sequences