NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211696_1001085

Scaffold Ga0211696_1001085


Overview

Basic Information
Taxon OID3300020252 Open in IMG/M
Scaffold IDGa0211696_1001085 Open in IMG/M
Source Dataset NameMarine prokaryotic communities collected during Tara Oceans survey from station TARA_078 - TARA_B100000524 (ERX555968-ERR599022)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3411
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_078
CoordinatesLat. (o)-30.1885Long. (o)-43.2831Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005533Metagenome / Metatranscriptome397Y
F087331Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0211696_10010857F005533AGGAMSYTKNETALLTFISNTNNQFYYIGEDNDKVAPVDVKKFTQYCVEFIDSLEIDHD
Ga0211696_10010858F087331GGAGMTRLWEYPEENPYGECTYDGKVEVYYNICNLLTDAELNKVWEIVGNACDRNNIATDGDQELSVRVYDEINSEDNDE

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