NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211696_1000013

Scaffold Ga0211696_1000013


Overview

Basic Information
Taxon OID3300020252 Open in IMG/M
Scaffold IDGa0211696_1000013 Open in IMG/M
Source Dataset NameMarine prokaryotic communities collected during Tara Oceans survey from station TARA_078 - TARA_B100000524 (ERX555968-ERR599022)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39414
Total Scaffold Genes74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)68 (91.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_078
CoordinatesLat. (o)-30.1885Long. (o)-43.2831Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026741Metagenome197Y
F049595Metagenome / Metatranscriptome146N
F058958Metagenome / Metatranscriptome134N
F086304Metagenome / Metatranscriptome111Y
F099995Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0211696_100001317F086304GGAGMIILELTRVCRSSGREDGKVLLTGDTFCVSQSSHRWGTFERDICIVDNGTHNNGGYWVADSYDDICESIKYQDLLVQKLRGARNE
Ga0211696_100001321F099995AGGAGMPFLYKDTDNWSGIKWCVRTVYWHDSYGLNDMLTYGGDYNPYESPDNPLVEFYDMDSLVANTETGDEEHDARIKERGQFVSRYYLNTLNGTDRGTHASAPQFEDNWANGLNLDGGIERWSISGEFYTKAMKAVNADFKEWMEDQNWEEE
Ga0211696_100001324F049595AGGGGGMEQVDYRFEDHGSIWLCHPMTADAKDNLRQACDADDAPFNISWCDALVVEPRFVNDVAKQLTDKGWVVE
Ga0211696_100001326F026741GGAGMTNDKPNLTNSHFAEVLAEPFADLLKPKKFYPTITVEYSPNKEEWEEIAETIWITALEGGSGHWIDNIHTEDEFDLKNGYSVVEYNFDIAIHHGSDGWGDDDVDIERVKAFDVIVDGINLLDPERQRLALTVSELGQLDANDCDFIIQLGVFGKEVYC
Ga0211696_100001335F058958GGAMTLRNQIIEQLGGRFFTATFTKTDGSLRHAYGQVIADDRLTDDHPNVITFIDFSKGGIRRMKLEAGTVYTIKSGKTVISNVA
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