Scaffold Ga0211700_1009254

Overview

Basic Information

• Taxon OID: 3300020251
• Scaffold ID: Ga0211700_1009254
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000519 (ERX555940-ERR599040)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1148
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_076
• Coordinates
  • Lat. (^o): -21.0675
  • Long. (^o): -35.3923
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042384	Metagenome	158	Y
F049043	Metagenome	147	Y
F056677	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211700_10092541	F042384	AGGAG	MGLMPIYYTTTKLSGRKKSSVRNQRLNKEHEKWLRSMGIDKPWKPKSEPLPLARAKKSERYQSVGNGIGNGFVKTTSAISGDYIIGQAYNKGNLVVLSKEDAKDETTGKRR
Ga0211700_10092542	F049043	GAGG	MKRNDMADMHKQLFLLVSLLKKDGHDPLAIAGCMLAGAVQIYQAELGEDTAFQLLDQIANGTDNDIDIDLDVDKETIH
Ga0211700_10092543	F056677	AGGAG	MDIYRNQERELKLARKPLIVLEDELWQINQLSRLRKDLRNRKKRLEKVIAVKRVALQAVQEKIEREVANEKK