Scaffold Ga0211700_1003730

Overview

Basic Information

• Taxon OID: 3300020251
• Scaffold ID: Ga0211700_1003730
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000519 (ERX555940-ERR599040)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1965
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_076
• Coordinates
  • Lat. (^o): -21.0675
  • Long. (^o): -35.3923
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006793	Metagenome	364	Y
F012584	Metagenome	279	Y
F016820	Metagenome	244	Y
F037769	Metagenome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211700_10037302	F037769	GAGG	MSYKQTESDKADEKLLRRLLSEEMPLKDANDIITHVFSNLIRWTYDDAVFHLTQVFNFTDEESDQLLSKYNIVCNSAPDLIMNPPPNFNATAPNDVKDFATNLWHARKHLLDAKKLISATALTPSDYDHQDDFQDALVQRMHLAEKFIEINKYIDEHLNFAKHYTPPQSS
Ga0211700_10037303	F012584	N/A	MKLRPVLPENTFILNEDSLPTQSDADPYGKVMVFRKDVGWTVVPLPEVIQYVAMKHTHWTFTPETP
Ga0211700_10037304	F016820	N/A	MTKKEFSYIVFSNSGENVEEIHGVYKDLEGATYGARSALSTLFPKHGDQAKIIRCEIISTEEAKKQHEDAKPKDLFEKCEDDYCPLPTQQVS
Ga0211700_10037305	F006793	N/A	MTNYRSTNEEKEQRINEAADELAKGKRAMDVSKKLAKKYSVSIQQAREYVRLAKPVLTESISPNDRAYIFSKVMSCLEQDRLDARKDENLKDQTKSTAGMVKMVSLLTSIDQVGSWDSASDQYLFKNFSEVKKKIKYDDLDSLDDIDPTAEMPF