Scaffold Ga0211700_1000961

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211700_1000961

Scaffold Ga0211700_1000961

Overview

Basic Information
Taxon OID	3300020251 Open in IMG/M
Scaffold ID	Ga0211700_1000961 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000519 (ERX555940-ERR599040)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5506
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (27.78%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_076
Coordinates	Lat. (^o)	-21.0675	Long. (^o)	-35.3923	Alt. (m)		Depth (m)	150
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F043984	Metagenome	155	Y
F059069	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211700_100096111	F043984	GGAGG	MSMSISEMYQEMIDQYTEMYMYRKAHKGVRSGETNPEEILDDLSAIELDMEWTNET
Ga0211700_10009616	F059069	N/A	MRINQYVVYTSPVRVVTDFAEACKLADDYFNETGYIVAVEETNPVVYPEYEVA

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