Scaffold Ga0211627_1015086

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211627_1015086

Scaffold Ga0211627_1015086

Overview

Basic Information
Taxon OID	3300020250 Open in IMG/M
Scaffold ID	Ga0211627_1015086 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000475 (ERX555986-ERR599129)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1349
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_068
Coordinates	Lat. (^o)	-31.0263	Long. (^o)	4.6977	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F031128	Metagenome	183	Y
F101315	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211627_10150862	F031128	N/A	MNQINKRCLKELDTYWNERLAYLAQSDRLDDAEALYSEFNIDGENLIYEAFDRNADILFMEYLNDL
Ga0211627_10150864	F101315	AGG	MNPDKIKIATEREFEYEKISRTIDKMDDIDDVKLLLKYTIKMGMKQTEILGNMLLVKY

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